rs50320663 SNP Detail

Summary

• ID
  rs50320663
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110343616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAACCCC AGATGGAGAA
  GCACTGGGGG GGGGGGGGTG TCTTGAGTGA CTGTTACAAC ACAGGGTGGG TTGACCTTAG
  CAGGACCTGG CTGCCGCGGA TACATCAGGT ATATCCTGCT GGTCTCCACA CTCAAAGCCA
  TAAGCAGAGA CGCAGAGCAC TTTGCCAAAT ATTGGGATAT GAAAGAGGCT ATGTTTGAGA
  M
  GTGCGTGGTC AATAAACGGT AACTGCACTC ATGGGCCCCC TCCCAGCTAA GTTTCACCAG
  AAAACATCTC TCAGAGGATG GTCCTAGTCT CCAGTCTAGG TAATTAGAGG GTGAGGCCCA
  CAGGCCCGCA CCTGGCTGAG TATGAAATCT CCTCAAAGCC TGGGCCCCAG GGAGCCCCTG
  AGTGCAGAAC AGCACGGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138689936	ENSMUSSNP1180842	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50320663					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110343616 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	1660 bp distal
Rr472875	regulatory region 472875	291 bp distal
Rr472876	regulatory region 472876	414 bp distal
Rr472877	regulatory region 472877	612 bp proximal
Rr472878	regulatory region 472878	676 bp proximal
Rr472879	regulatory region 472879	756 bp proximal
Tssr115196	transcription start site region 115196	1665 bp downstream