rs50321303 SNP Detail

Summary

• ID
  rs50321303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44464606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTACCTG CCAGGGGCTC
  TCCCCCCCCT GGAAGCCCGC CCTCCAGGGC ACCCCCAAGG ACCTCATAGG GGCCCAGGGG
  GGCAGGGGCC AGGGGGAGTT TCCCATAGTC TACGAGCCAG CCCAGCCCGC TAGCTGGGAG
  CAGGGCCCTG TCCAGCTCCA GTCCCAGGGT CGCCAGGAGT GACATGGCTG TGACACAGGC
  R
  CAGGGCAGCG ACGGCAATGG AGGCTGCACC AACAATTGGG AGGCAGCGTG GAAGATTGTT
  CAGCTGGGTG AAGACAGGCA CCAAGGCGAA GGTGGAGGAC CTGTGAGGAC AAGGGGACGT
  GGGTGGGATT GAGTCAAAGC GGCTTGACCC ACAGGCTACA CAGTTTCCTT CTTTCCGAAA
  ATTTCAGCGC TCCACACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149123006	ENSMUSSNP3062815	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50321303					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44464606 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	567 bp proximal
Il4i1b	interleukin 4 induced 1B	1188 bp upstream
Nup62	nucleoporin 62	906 bp upstream
Rr400297	regulatory region 400297	590 bp upstream
Tssr66425	transcription start site region 66425	1842 bp downstream
Tssr66426	transcription start site region 66426	747 bp upstream
Tssr66427	transcription start site region 66427	1108 bp upstream
Tssr66428	transcription start site region 66428	1141 bp upstream
Tssr66429	transcription start site region 66429	1182 bp upstream
Tssr66430	transcription start site region 66430	1204 bp upstream
Tssr72229	transcription start site region 72229	1838 bp upstream
Tssr72230	transcription start site region 72230	437 bp downstream
Tssr72231	transcription start site region 72231	482 bp downstream
Tssr72232	transcription start site region 72232	727 bp downstream
Tssr72233	transcription start site region 72233	1404 bp downstream
Tssr72234	transcription start site region 72234	1772 bp downstream