rs50321339 SNP Detail

Summary

• ID
  rs50321339
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24601029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGAAGAGA CCAAAGTCTA ATTTTTCTCT TTTTCTCCTA
  GTAATTTATT TTTTATGTAC AGTGGTGTTT TGCCTGCACG TATGTCTGTG TGAGGATGTC
  M
  GATACCCTGG AACTGGAGTT ACAGACAGTT GTGAACTGCC ATGTGGATGC TGGGAATTGA
  ACCCTGGTGC TCTGGAAGAG CAGGCAGTGC TCTTAACCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148093051	ENSMUSSNP1527203	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321495670	CHEV_5_23901849	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50321339					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24601029 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	1275 bp distal
Rr398999	regulatory region 398999	1561 bp downstream
Tssr45412	transcription start site region 45412	1601 bp downstream