rs50321379 SNP Detail

Summary

• ID
  rs50321379
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG ATTAAGAGGC ATAGTGAAGA
  A
  GGGTCCAAGT GGCCTTGCCC AACCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132512987	ENSMUSSNP4905039	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323773677	CHEV_11_87610593	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50321379					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687917 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr453904	regulatory region 453904	919 bp distal
Rr453905	regulatory region 453905	865 bp distal
Tssr3632	transcription start site region 3632	1823 bp downstream
Tssr3633	transcription start site region 3633	752 bp downstream
Tssr103990	transcription start site region 103990	1864 bp downstream
Tssr103991	transcription start site region 103991	1791 bp downstream
Tssr103992	transcription start site region 103992	1773 bp downstream
Tssr103993	transcription start site region 103993	1299 bp downstream
Tssr103994	transcription start site region 103994	1217 bp downstream
Tssr103995	transcription start site region 103995	1048 bp downstream
Tssr103996	transcription start site region 103996	998 bp downstream
Tssr103997	transcription start site region 103997	828 bp downstream
Tssr103998	transcription start site region 103998	683 bp downstream
Tssr103999	transcription start site region 103999	225 bp upstream
Tssr104000	transcription start site region 104000	337 bp upstream
Tssr104001	transcription start site region 104001	367 bp upstream
Tssr104002	transcription start site region 104002	393 bp upstream
Tssr104003	transcription start site region 104003	466 bp upstream
Tssr104004	transcription start site region 104004	492 bp upstream
Tssr104005	transcription start site region 104005	516 bp upstream
Tssr109976	transcription start site region 109976	657 bp upstream
Tssr109977	transcription start site region 109977	254 bp downstream
Tssr109978	transcription start site region 109978	282 bp downstream
Tssr109979	transcription start site region 109979	334 bp downstream
Tssr109980	transcription start site region 109980	522 bp downstream