rs50321401 SNP Detail

Summary

• ID
  rs50321401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65252191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCACAA AGAACTTGGA
  AAGATACCCC ATTGCCAGTT AGATAATGCC AGGCATCCAT CCAGGTCCTT TACACTGACC
  TGCCATTCTC TCTGTGGTGG CCGCCATGAC TCTCAGTCTT CTCTAGATCT TGCCATCTGG
  GAGGAGACAC ACTGTTATCA ACCTCATCTC TATTTCACAG AAAGATGAAA CAGAGCTCAG
  Y
  GAGATTAATA AGCTCATTCC AGGTAAGCAA GCCAAGCTGG TCTGTAAACT CAAATGGCTT
  CCTTCTAAAA GCCGAGAGAT TCAGTCTCAA CACTCATAAG CCCTTGAATA AAAAGTTGAG
  GTCCTCTTAA TGTTGGATAT TTTCTCACAA ATTCAGCACG AGCCTTCTAT GGCTTTAATA
  TGTATTAGCT GAATGGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62843405	NES17378515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50321401					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62843405	NES17378515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65252191 () rs orientation: forward

Symbol	Name	Function Class
Gm25344	predicted gene, 25344	344 bp upstream