rs50321866 SNP Detail

Summary

• ID
  rs50321866
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72027365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AATTAATTTG GCTCTGGAAA TCTCCTGTTA CAGTTAAAAT
  ACTTAACACA CCTTAAGTTA TCATTGACAA TACTGTGTAA AGTATTGTGT TTCTTGTTTA
  K
  TTTTTTTTTT TTTTTTCATC ATGCACCATG GGCTCCAAGC CCAAGAGAAC TTCTTTGCCT
  CAGATAGTCA CATAGTGTCA GTCATATGGG GGCTTCTCTC T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146757983	ENSMUSSNP5406568	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50321866					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72027365 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75163	predicted gene, 75163			within coordinates
Rapgef4	Rap guanine nucleotide exchange factor (GEF) 4			Intron
				Noncoding-Transcript-Variant
Rr558927	regulatory region 558927			164 bp distal
Rr558928	regulatory region 558928			15 bp proximal
Rr558929	regulatory region 558929			190 bp proximal