rs50323147 SNP Detail

Summary

• ID
  rs50323147
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96680204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCCCCTCGGA CCGCCCGACG CAACGCGCGA GTAGCGCGGC
  ACCGATTCCT CTCGGACTCT CGGGCGCTGC TACGAGGTGA AGAGGCGGGC TGGAGGCGGG
  K
  TGTGTGGGGG GAGGGGACGC GGCAACGGCG GGAGGCCGCG GACCAGCGCG GGCCGCTAAC
  GGAAGAGCGG AGACCGAGGA ATGGGGGGCG CGCCCCGGCC C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132687347	ENSMUSSNP2184112	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50323147					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96680204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			within coordinates
Rr455508	regulatory region 455508			119 bp distal
Rr455509	regulatory region 455509			within coordinates
Rr455510	regulatory region 455510			1335 bp proximal
Tssr104569	transcription start site region 104569			232 bp downstream
Tssr104570	transcription start site region 104570			172 bp downstream
Tssr104571	transcription start site region 104571			154 bp downstream
Tssr104572	transcription start site region 104572			124 bp downstream
Tssr110346	transcription start site region 110346			370 bp upstream