rs50323232 SNP Detail

Summary

• ID
  rs50323232
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80645275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTGAAG TGGAGGAATG
  AGCACAGCCA CCCACCTCTT CTTTGCCCTC ACCCCCAGAA CTCCACTGGG ATACCCCAAC
  CTCCTCCTAG AGACCTCTCT TTTTTCTCTT TGGAGTGGCC ATTCCCCGCC CCCAGCTGCA
  CGAGGGTTGC TAGCAATAAT AATCGTGGGG GCGATCCTCT GCTCCAGGAT GAAGTGGAGA
  W
  CCCTTCTCGG ATGGAGTGGG AGGACCCGGC TCAGTCGTGT ATGTCTGTCA TCCTGGCTGG
  AGGAATGCTG AGGCACAAGG ATTGCCATGA GACCCAGGCT AGCTTGTGCC TTTGTAAAGG
  GAGCCCTTGA TTCAAAACAA AAGCCAGGGC CCAAGGTATA CTCCTGCCAT TCCTAGATCT
  TGGGAGGTCA AAGTAGGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61290497	NES16901540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50323232					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290497	NES16901540	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80645275 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	1793 bp downstream
Cpgi1909	CpG island 1909	1577 bp distal
Cpgi1910	CpG island 1910	262 bp distal
Cpgi1911	CpG island 1911	718 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	within coordinates
Tssr94628	transcription start site region 94628	1742 bp downstream
Tssr98516	transcription start site region 98516	1781 bp upstream