rs50324869 SNP Detail

Summary

• ID
  rs50324869
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118375088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC CGAGGTACAA TCTCCAGAGT
  M
  CTGTGCCTGG GTTCCCAGAC ACAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147304434	ENSMUSSNP4222992	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320470270	CHEV_2_118370343	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50324869					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118375088 () rs orientation: forward

Symbol	Name	Function Class
Bmf	BCL2 modifying factor	within coordinates
Cpgi12082	CpG island 12082	within coordinates
Rr397207	regulatory region 397207	1155 bp upstream
Rr397208	regulatory region 397208	1896 bp upstream
Rr563262	regulatory region 563262	1263 bp distal
Rr563263	regulatory region 563263	1577 bp proximal
Tssr25777	transcription start site region 25777	555 bp downstream
Tssr25778	transcription start site region 25778	703 bp downstream