rs50324902 SNP Detail

Summary

• ID
  rs50324902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191571936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGCCTT TCAGAGCTGG
  GCCTCATCAC GCCCCTTTCC CGGTGTGAGT CTTCCCTTCC CTTCTTGTTG CTTAGCTGCG
  GTCGGCAGAG CCTTTTCACA CACACAGTCT CAGTAGCTCC CTAACAAGGC TGCAACAGGC
  CTAGACGAAT TCTGTTCTCA TACAGAAAAT AAAGATGCAG AGAGCTAAGA TCACTGACAC
  Y
  CAAGAACTCC AGGCATCCCA GTGTTAAGGC AGGACGCTGG TTTACAGACT TTAGTGTGCT
  CGGGACTGTC CATGACTTCC TTGAAAGGGT CAGTGGGTGG ATTTTTCTGG TAGCCTACAG
  ACTTCATCAG ACTCTTCACA TCTGAGTCAG GAGAAGTGGT TGCTTTCAAA TCAGCACAAA
  GACTTACCAT GCCTACCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360493	NES15857427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50324902					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360493	NES15857427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191571936 () rs orientation: forward

Symbol	Name	Function Class
Rr426234	regulatory region 426234	1794 bp distal
Rr426235	regulatory region 426235	within coordinates
Rr426236	regulatory region 426236	199 bp proximal
Rr426237	regulatory region 426237	686 bp proximal