rs50325265 SNP Detail

Summary

• ID
  rs50325265
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84441276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTGAACA GCTACAGTGT ACTAAGATGT AATAATAAAT
  AAATCTTGCC AGGCCTGGTG GTGTACGCCT TTAATCCCAG CACTTGGGAG GCAGAGGCAG
  G
  CGGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCTAGGGCT
  TCACAGAGAA ACCCTGTCTC GAAAACCAAA AATAAATAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145360638	ENSMUSSNP6540391	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50325265					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84441276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	263 bp proximal
Ddx39a	DEAD box helicase 39a	530 bp upstream
Rr382392	regulatory region 382392	540 bp downstream
Rr401010	regulatory region 401010	327 bp upstream
Rr666291	regulatory region 666291	99 bp distal
Rr666292	regulatory region 666292	40 bp proximal
Rr666293	regulatory region 666293	912 bp proximal
Rr666294	regulatory region 666294	1941 bp proximal
Tssr78284	transcription start site region 78284	544 bp upstream
Tssr78285	transcription start site region 78285	580 bp upstream
Tssr78286	transcription start site region 78286	592 bp upstream
Tssr78287	transcription start site region 78287	658 bp upstream
Tssr78288	transcription start site region 78288	857 bp upstream