rs50325305 SNP Detail

Summary

• ID
  rs50325305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:15800829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCTCTCT CACCCATGCT AATATAGGCA ACCCTAATTT
  ACCTCAGTGG TTCACACACA CACACAAAAA AAAAAAAAAT ACATGAAATT AGGATGAAGC
  Y
  TTGCTGAGAA GAAGGATTTC AGTGGGAGAG GGAGAGTGTC TGGCAGAGAC AAACTGGAGT
  AAAAAGAAGT ACAATTCATG ACATATAAGA CACAGACAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63665025	NES17054797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50325305					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63665025	NES17054797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:15800829 () rs orientation: forward

Symbol	Name	Function Class
Rr404696	regulatory region 404696	1678 bp upstream
Rr512189	regulatory region 512189	1242 bp proximal
Spidr	scaffolding protein involved in DNA repair	within coordinates
Tssr137231	transcription start site region 137231	1512 bp upstream