rs50327040 SNP Detail

Summary

• ID
  rs50327040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122294665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC TGGGAACCAT TTGTTGGCTG
  M
  ATGAAGAAAT CTTTCCAAAA TTGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147010172	ENSMUSSNP2256769	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss324857803	CHEV_14_122456475	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50327040					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122294665 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	481 bp downstream
Gm63496	predicted gene, 63496	within coordinates
Rr498317	regulatory region 498317	587 bp proximal
Rr498318	regulatory region 498318	801 bp proximal
Tssr127312	transcription start site region 127312	1085 bp upstream
Tssr130315	transcription start site region 130315	809 bp downstream