rs50327804 SNP Detail

Summary

• ID
  rs50327804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67600981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG ACTCCTGAAG CATACAGAAC
  Y
  ACAGGTTCGC AACCATACAG CCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149266960	ENSMUSSNP1213892	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324392154	CHEV_13_67553798	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50327804					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67600981 () rs orientation: forward

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	within coordinates
Rr388629	regulatory region 388629	within coordinates
Tssr120253	transcription start site region 120253	1603 bp downstream
Tssr123102	transcription start site region 123102	1224 bp upstream
Zfp874a	zinc finger protein 874a	1238 bp upstream