rs50328020 SNP Detail

Summary

• ID
  rs50328020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATTGGCT CAACTATGAA CAGATATCTG TTCATAATTA
  ACAGATATCT TATCAACGTA TGTTATCTTG ATGATATGTT TTCTGTTTTG AGTAAAGGTC
  Y
  CATTACATGA CCCACATTGA CCTAAACTCA CTACACAGCG TGGCCTGGAG CTTGCAATTG
  ACTCCTTGTG GCCTCTGGAG TAATTACTGG AGAATGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148092340	ENSMUSSNP3663694	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C		C
ss320584280	CHEV_2_156943209	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50328020					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959393 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	189 bp distal
Rr568437	regulatory region 568437	325 bp distal
Rr568438	regulatory region 568438	55 bp proximal
Rr568439	regulatory region 568439	1558 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron