rs50329595 SNP Detail

Summary

• ID
  rs50329595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127291833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGTGC GTGGGCCGCC
  ATGCCGGAGG ACCACTACTC CCTTTTAAAA TTATTAAAGT ATATATAACA TAGACAGAAA
  AATAGGACTT ATTCAAACAG CCAGACAAGT GGGCAAGCCC TTGTTGCGGT GCTGGAGGGC
  TGGGCAAACT GTGAGTATCG ATGCAGGGCG AGCATGAATA CCTTCCCTAC CACTACATGA
  Y
  TGCAGTTGTT GGGGTAGCCG TGTTGAAAGT TGAAGTCCCT TCTCTCCTGT GGGTGAGAAG
  CCAGCATTTG CAGCCACCCC TGGCAAAGGT CCTAAGAAAA CTCCATTCAG GGCTACAGCC
  CCATCCTAGC ACCCTGAGTG GCTTCTAACG GTATAGCTCT GCAGTGGGTC ATGTGACAGC
  TGGGTGTGTG CCTCCTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61079245	NES16586981	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50329595					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079245	NES16586981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127291833 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	148 bp proximal
Rr584800	regulatory region 584800	807 bp proximal
Tssr35576	transcription start site region 35576	802 bp downstream
Tssr35577	transcription start site region 35577	865 bp downstream
Tssr35578	transcription start site region 35578	892 bp downstream
Tssr35579	transcription start site region 35579	911 bp downstream