rs50329761 SNP Detail

Summary

• ID
  rs50329761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75564454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAGTCCCC TTAGCATTCC
  ACAGTGGGGC AGTCCTACCG GAGACCCCAC CTCTGGTGTA CCTGTTCGTT GCTTTGCAAA
  TATCCTTGCA GTCATTAAAT GCAATGCCAG CCCGATGCTG TTGGCAGTAA ATTATTTCAC
  GGGCTCGTCA GGAATGAAGT TTGTCCAGGA CCGCATGGTT TATCCAAGAT ATTTTCAAAT
  Y
  TAATATTAAC ATTCACATAT GCTATTACCA ACTAATATGG AAAGATACAT TCTACTTTTC
  GTTTTAATTA TGTCATAAAT GGCCAGAATT GTCTTCCTGG ACAGGTCCGT CCTTTCACGT
  GTTGACTATC CGATCACTTT TCCCCTGGCG CCATAAGACA CGTTAGCAAA GCAATTTGAA
  GAAGACAAGA TTTATTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60495632	NES16525098	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50329761					SNP	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60495632	NES16525098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75564454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	557 bp distal
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	251 bp downstream
Rr404917	regulatory region 404917	346 bp upstream
Tssr141799	transcription start site region 141799	769 bp upstream
Tssr141800	transcription start site region 141800	491 bp upstream