rs50330001 SNP Detail

Summary

• ID
  rs50330001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96181949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTTTGG GAAGAGGCCA
  GGCCAGCAAG TAGAGGCCTC CTAGCCTCCC CAGGACAACC TACTTGCCAG GGTGCTCACA
  ATTTTCCCAC TCGGCAAACA TTTTTCATCA GATGCCTTGC TTTTATTTCA ATTTATTTTT
  ACTTTATGTA TTTAAATCTA TTTCATTCTA AATTGGCATG GGCGATCCAC ATGAAATTTT
  W
  AAATTGAAGG GAAACCAGTC CCGGCGAGCG ACAGTGAGTT TACCGGGCTG GGGTGCGTCC
  GCAGTGAGCC TGGCAGCACC GGACGCCAGG GCTTCCTCTG GGCCGTTCGG CCTGCTCCTG
  AGTACGGCCA ACCTGGAACC TTCTGAGGGG CACACACACA CACAGGAGGG GGAGGGAGAG
  AAAAATATGT TTTTTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132676614	ENSMUSSNP6517578	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50330001					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96181949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3638	CpG island 3638	1501 bp distal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	1698 bp upstream
Hoxb7	homeobox B7	961 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	863 bp proximal
Rr455357	regulatory region 455357	1364 bp proximal
Tssr104478	transcription start site region 104478	1030 bp upstream
Tssr104479	transcription start site region 104479	1330 bp upstream
Tssr110325	transcription start site region 110325	1595 bp upstream