rs50335756 SNP Detail

Summary

• ID
  rs50335756
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76370739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG ATCCCAGCCA GGCACACACA
  C
  AAGACCACAG TGGTAGCAAA TGCAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146590155	ENSMUSSNP4923302	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50335756					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76370739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	1729 bp distal
Gm42303	predicted gene, 42303	within coordinates
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	938 bp distal
Rr101141	regulatory region 101141	within coordinates
Tssr37647	transcription start site region 37647	1591 bp downstream
Tssr37648	transcription start site region 37648	1039 bp downstream
Tssr42164	transcription start site region 42164	1887 bp upstream