rs50336156 SNP Detail

Summary

• ID
  rs50336156
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGCTGGC GAGTCCTGCA CTGGAGCAGA GTGGAAGAAG
  CCACCCTGAG AGGCTATCTC TGCCACAGCC AAGCAGGGGG AGATGAGGCT AACCGCAGAG
  M
  ACTTCTCAAT TTGAGACACT CATCTGCTCA GAAGCACCCT CATTTCAGAG ATCCCCTTGG
  CCCCTAACAC ACACAGACGC ACCTATGGGA GTATTCTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148023958	ENSMUSSNP936524	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320569713	CHEV_2_154018479	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50336156					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034663 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1915 bp distal
Rr567775	regulatory region 567775	1709 bp distal
Rr567776	regulatory region 567776	1667 bp distal
Rr567777	regulatory region 567777	110 bp distal
Rr567778	regulatory region 567778	1004 bp proximal
Tssr20971	transcription start site region 20971	1984 bp downstream
Tssr20972	transcription start site region 20972	1975 bp downstream
Tssr20973	transcription start site region 20973	1961 bp downstream
Tssr20974	transcription start site region 20974	1911 bp downstream
Tssr20975	transcription start site region 20975	1886 bp downstream
Tssr20976	transcription start site region 20976	1470 bp downstream
Tssr20977	transcription start site region 20977	612 bp upstream