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rs50337803 SNP Detail
Summary
  • ID
    rs50337803
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:14618622 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCACTGCCTC TGCCTCCCGA
    GTGCTGGGAC TTATTTATCG TTGATCCCTG CTATGCACAT GTGAGGCTTA TCTTCTTATC
    CAGGTTCAAG TGTACAGCTG GGGCCTTGAT CCCACCAACA AGGCTCACCC TACAGATGCT
    CTCCTGTGTA CACTGTAGAC ACAGTGAGAC TTGGTTTTTT TTTTTTTTGT CATGGTAGGA
    M
    TAACGGTGCC TGTGTGCCCA CTTCCTCACA GTACAGGGTG ATGGAGCTGT CCAGGTGGTA
    CTTCAGTACT TAAACTCAGC TCTGGGTGTT CACAATCTCT CACTCTTATT TCTAAAAGAA
    ACTTTATTTT AAAGTTTTTT TTTTTTGTTT TTCTAAAAAC ACTTGTTCCC ATGCCGTCCT
    GACAGCGAGC TCCTGGCTGT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60541467 NES16554262 PERLEGEN MM_PANEL2 f SNP A A A A A A C A A A C A A C A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs50337803 SNP A A A A A A C A A A C A A C A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60541467 NES16554262 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:14618622 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930474M22Rik RIKEN cDNA 4930474M22 gene within coordinates
Smoc2 SPARC related modular calcium binding 2 within coordinates
Tssr5014 transcription start site region 5014 584 bp downstream
Tssr142738 transcription start site region 142738 667 bp upstream
Tssr142739 transcription start site region 142739 875 bp upstream
Tssr142740 transcription start site region 142740 900 bp upstream
Tssr146495 transcription start site region 146495 571 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory