rs50338245 SNP Detail

Summary

• ID
  rs50338245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAATCCCTG ATTGCCCATT GGTCATTGGG AATTTTGCCA
  AATGCCTCGA TGTCTCTTTC TCTACATCTT CTTAGCCATT GGCAATTCTG ATAGGTTTTA
  R
  CTTCAAATTG TGGCAAGACT GACTATTTCC TTAGCACCTC CACCTCTGTT CCCTTATTGG
  CTCTCATTCT TTCTGTATTT GGAGCATGGC AGTATCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585278	CHEV_2_157106628	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50338245					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	1053 bp distal
Mroh8	maestro heat-like repeat family member 8	1343 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1843 bp downstream
Rr568459	regulatory region 568459	1736 bp distal
Rr568460	regulatory region 568460	944 bp distal
Tssr21228	transcription start site region 21228	1867 bp downstream
Tssr21229	transcription start site region 21229	1828 bp downstream
Tssr21230	transcription start site region 21230	1762 bp downstream
Tssr21231	transcription start site region 21231	1575 bp downstream
Tssr27165	transcription start site region 27165	1374 bp upstream
Tssr27166	transcription start site region 27166	1337 bp upstream
Tssr27167	transcription start site region 27167	1314 bp upstream