rs50338286 SNP Detail

Summary

• ID
  rs50338286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41383697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG TGAGTAAAAA TCCAACTAGA
  R
  TTGATTAAAT ATTTGCCTGG GCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146447544	ENSMUSSNP275685	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320246497	CHEV_2_41349205	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50338286					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41383697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit371	DNA segment, Chr 2, Massachusetts Institute of Technology 371			1503 bp proximal
Gm74545	predicted gene, 74545			1238 bp upstream
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant
Rr373095	regulatory region 373095			1353 bp downstream