rs50339583 SNP Detail

Summary

• ID
  rs50339583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99090383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTCATC AGATCCTACT
  GCAGGCCAGC CATTTGACCA CAGGGAGAAA ACAAAATTAT GGTCCTTCCA TGGAGGAGCT
  GCAGCTGAGT GTCTGGATTC ATCTATCTGT TCTCTGCATG AGCTGTGGAT AGACTTGAAT
  AAATACTAGC TTGCAAACTT AGTTGCAAAT GCTGCTGAGA AAACTGGGAA ATGTGTTAGG
  R
  TTTCATTTAC ATCCAAGCTG CAATCTCAGA AGTGTGTAGG TATTCCTATT TGCAAATCCC
  AAACTAGGTT TGATGTTTTT GATTTACTAA CTTTATATGC TTTAAAAACA TCTCCAAAGG
  TGGGACAGGG GCACAGCAGT GCATTGGAGT TTGGGCCAAA CAAAACAAAG CTCTAGAAGT
  CTCCAATGTT TCTCTGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61200735	NES16706833	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50339583					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200735	NES16706833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99090383 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Rr615191	regulatory region 615191	1298 bp distal
Tssr52014	transcription start site region 52014	1239 bp downstream
Tssr52015	transcription start site region 52015	1262 bp downstream
Tssr52016	transcription start site region 52016	1298 bp downstream
Tssr52017	transcription start site region 52017	1353 bp downstream