rs50339834 SNP Detail

Summary

• ID
  rs50339834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:85498486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTTGTG CATTTTGAAG
  GGAGTATCTC GAGCTGTTAC TGTTTGGAGC TCATTGATTT TTTTTTTTTT TAATCTGTCA
  CCTACATTTT TTTTTGAACT TTGCAGAATT ATAGGTTCTT AGAGCGAATC TATTTCTATT
  AAGTAAGTAT AGCATTGAAC TATTTCAAAT GAAAACATAC ATCTTCCTGA GCACTATCCA
  Y
  ATCCACAGAA ATGCATATGT TTAGTTCTGA TAGATAAAGG GAATGTGGGA TTTCATGTTG
  TAAAACATTG TTATTCCTTA AGAACAAGGT ACATGCCTAA ACTTGCCTAT CATCTATAGA
  CCGCAGCAGT TAGTCAACGC CTCAGAACAG CATAGGGTGA TGTTCCAGTC AGAATCAGGC
  TCTACTGCCC TATCCACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62956330	NES17405102	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50339834					SNP	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62956330	NES17405102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85498486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camkmt	calmodulin-lysine N-methyltransferase			Intron
				Noncoding-Transcript-Variant
Rr393055	regulatory region 393055			within coordinates
Rr405503	regulatory region 405503			1100 bp downstream
Rr532225	regulatory region 532225			650 bp distal
Rr532226	regulatory region 532226			1272 bp distal
Tssr146080	transcription start site region 146080			990 bp downstream