rs50339985 SNP Detail

Summary

• ID
  rs50339985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180432369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT CTCTTCTTTG GTCCTAGAAG
  Y
  AGCTGACACA GACATCCTGT GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148393354	ENSMUSSNP3801300	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320632351	CHEV_2_180525281	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50339985					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180432369 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572848	regulatory region 572848	1300 bp distal
Rr572849	regulatory region 572849	1184 bp proximal
Rr572850	regulatory region 572850	1316 bp proximal