rs50340001 SNP Detail

Summary

• ID
  rs50340001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185246257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACTCAT CTATCTTTCA
  TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTACCTATC TATCAATCTC
  TCTATCATCA ATTGTCTAGC TTGTATTTTC TTTATCCAGT CATCTGTTGA TAAACTTAGG
  AGTCCATCTG TCTTTTTCAT GGAGCAATTT CCTTCTTTGA TCATGTATCT AGTAATGCCT
  Y
  GCTGTATATA ACAATAGTTC TATTTTAGTT TTTTTAATAA AAGAAACTGT CATATTATTT
  CCCATAATCT TTCTATTATT CACTTTATTT TCATATCCTG TCCTTATTTT TACATAAAAA
  ACACAGCCAC CTAATAGAGT GAGATGGTAC CTCATTTGAC TTTGAGTTGT GTTTTCTTGG
  CAACTAGAGA CAGTGAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146434916	ENSMUSSNP4254742	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320176777	CHEV_1_187337939	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50340001					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185246257 () rs orientation: forward

Symbol	Name	Function Class
Rr425406	regulatory region 425406	879 bp proximal