rs50340367 SNP Detail

Summary

• ID
  rs50340367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGT GAACGCTTGA GTTTTCATGA
  Y
  GGCGATAAGG TTGAAAGGAG TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146433173	ENSMUSSNP4946244	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325817164	CHEV_19_44144793	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50340367					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	129 bp distal
Erlin1	ER lipid raft associated 1	518 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	433 bp distal
Rr548151	regulatory region 548151	42 bp distal
Rr548152	regulatory region 548152	174 bp proximal
Tssr159429	transcription start site region 159429	881 bp upstream
Tssr159430	transcription start site region 159430	628 bp upstream
Tssr159431	transcription start site region 159431	595 bp upstream
Tssr159432	transcription start site region 159432	516 bp upstream