rs50340530 SNP Detail

Summary

• ID
  rs50340530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTCACA AGCAGTCAAT
  TTGATGAAAA CTAGTTTTCT TGTTTGTTGA CATAGAAACA AAATCATTTG GCTGATAACG
  TTTTTGTATT CTCAGAGAAC CGTTTTGGCG CTTGGGAGGG CCATTGTTTC CCAACTGTTT
  GGGTGGAGAC ATAGGCTCCA AATTCACTCT TCACCACCCC CCCCCCCCAA AGCAGGAAGA
  Y
  TTAGAAAGAA CCAGTCTTCC ATGTGCATTC TAGTCCAATC TTATTCATCC AGATGTCTGG
  GTGGGCTAGG CTTCACTGTA CATAATACTC AGTACGCTTT CCCTAAGCAT CTCCCCACTC
  AGTTTCTTAA ACTCCATGAG GAAGTCCAGG GAAATTGAAA GCTCTGTCTC AATGCTTATT
  TTCAAAGTTC TAGTATTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135841043	ENSMUSSNP2825985	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50340530					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1109 bp upstream
Tssr31580	transcription start site region 31580			1144 bp upstream
Tssr31581	transcription start site region 31581			1155 bp upstream