rs50340741 SNP Detail

Summary

• ID
  rs50340741
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:98620963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccccggacc tcagactgtg agacccttcc
  cgtggcttct tacagcccaa catcttccca gcaatggtgt ggggaatgag cagtcaaaac
  ttcctgtgtc ccacctggaa gtgtggccta agcttcgagc agatgtggat ctccatcctt
  W
  AACCAACAAA CACTATCATG TTAGCTACAA CATTTTCCAA GCTTTCATCT TGATGTCATA
  TTTTATACTT TCTTGAGGTG TTTTATGGTT TAAAATGCAC GATAGAAACT ATTTAAATGT
  CTTACACTGA TTCACTATTT ACTAGTGATC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60772836	NES16420667	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	T		A
ss319867639	CHEV_1_100589815	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50340741					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60772836	NES16420667	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:98620963 () rs orientation: forward

Symbol	Name	Function Class
Tssr8238	transcription start site region 8238	238 bp upstream