rs50341388 SNP Detail

Summary

• ID
  rs50341388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31468621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAAACCC TTTCCTCCCC
  AACTGCTTCT TGGTCATGAT GTTTGTGCAG GGATAGAAAC CCTGACTAAG ACAGTGGGTA
  AAAGCCACAC ATTCAAAAGT ACTTGGTCAG CTCATATTTG ATGGATTAAA AAGATCAGCA
  CCCTAGCCAG GCAGTGGTGG CGCACGCCTT TAGTCCCAGC ACTTGGGAGG CAGAGGCAGG
  Y
  GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA
  CACAGAGAAA CCCTGTCTTG AAAAACAAAA AAGCAAAAAA AAAAAAAAAA AAAAAAGAAA
  ATCACCACCC CAAAGGCCAC AAGGTAAGGG CTAGTTAGGG AAGGGGAAAC GAATCTTCCA
  AGACTGGGGT GAAGGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445880	ENSMUSSNP6162295	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50341388					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31468621 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	554 bp upstream
Tssr133931	transcription start site region 133931	523 bp upstream
Tssr133932	transcription start site region 133932	495 bp upstream