rs50342712 SNP Detail

Summary

• ID
  rs50342712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75650337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGAAGA ACAGATGAGA
  CTCATCACCT CCCATTCCTT TGAGCATCTT TAAACAGTTA ATGTTTCTTA GGAGGGGTGC
  ATCATTTTCT TCACTGAGAA AGGCACTGAT AAGTTATCCA TGCTCTAGTA AGTAAACTCT
  TACCCACACT CACTTGAGAA ACTCAAATCA AACTCCATGT GCCCTGTACA CACAAAGCAT
  Y
  CAAGTAGAAT GGAGACTTGT AAAGGAGAAG GTATTACAAG GAGAGGGAGA GGAGATGGTT
  TTACCAGGAG GAGAAAGTGA TTGAACAAGG AGAATAGGAA ATGAAAATGG TTGACATTCA
  TTGTATACAT GTACGAAACT TTCCAAGACT TATTTTTTTA TATTTTTATT GGTTTGTTTT
  TTATTTACAT TTCAAATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135330183	ENSMUSSNP4443089	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50342712					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75650337 () rs orientation: forward

Symbol	Name	Function Class
Rr397722	regulatory region 397722	420 bp upstream