rs50342901 SNP Detail

Summary

• ID
  rs50342901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51261296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA CTAGAGTTAC AGACTGTGAT
  R
  AGTCACCATG TGGGTGCTGG GACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135172833	ENSMUSSNP1189486	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320762378	CHEV_3_51157797	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50342901					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51261296 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	within coordinates
Rr576283	regulatory region 576283	301 bp distal
Rr576284	regulatory region 576284	337 bp proximal
Rr576285	regulatory region 576285	1389 bp proximal