rs50343690 SNP Detail

Summary

• ID
  rs50343690
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108064132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCAAC AACCATGAGA
  ACTGATTAGC CTACAGCTGG TGACTGACTC CAGCAGTCAC CATCTCTGAA TTCTTAATGA
  GCGGCAGACA TGACATACAT CTTCCATCCT CACATCAGCG TTTAAAGCAT CATCTCTAGG
  GAAAAGAGGG CACAAGGTGA CGTGACCTTC TCCAGATCAA ATACAGCCAG AGCCAATATG
  M
  AAACCTCATT CAGTTTGAAT ATAAGGTGTT TTGAATATAG GATCTTTCCT GGTCCCATGC
  CTTTCTGGGG CCCTGATGTG GCACTCAGGA CAATAGCACA GATTGATATA GGACATAGAA
  CCCCTTCCAG GGATTCAGAG AGAGAGAGAG CAGACACCAT TGTTCTAACA AAACTACAGA
  CAGAAAGCAC TAGACTGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135585476	ENSMUSSNP2864107	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50343690					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108064132 () rs orientation: forward

Symbol	Name	Function Class
Gpr61	G protein-coupled receptor 61	1914 bp upstream
Rr583152	regulatory region 583152	1945 bp distal
Rr583153	regulatory region 583153	1779 bp distal
Rr583154	regulatory region 583154	715 bp proximal
Rr583155	regulatory region 583155	1345 bp proximal
Tssr35129	transcription start site region 35129	1908 bp upstream