rs50344542 SNP Detail

Summary

• ID
  rs50344542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91401146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC TCTTCCTTCC TTTAGCCTCC
  R
  GTAAAACCTG GAAAAAAGTG TAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293386	NES15791745	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50344542					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293386	NES15791745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91401146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	749 bp distal
Nrxn1	neurexin I	647 bp upstream
Rr334029	regulatory region 334029	546 bp distal
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	896 bp upstream
Tssr149871	transcription start site region 149871	860 bp upstream
Tssr149872	transcription start site region 149872	841 bp upstream
Tssr149873	transcription start site region 149873	723 bp upstream
Tssr149874	transcription start site region 149874	689 bp upstream
Tssr149875	transcription start site region 149875	641 bp upstream