rs50344758 SNP Detail

Summary

• ID
  rs50344758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118093207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA ATGAATGTAT TTTAAGCTAA
  S
  TTCCCCTGGT CTTATTCCAG GGTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147293631	ENSMUSSNP6120565	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		G
ss320468257	CHEV_2_118088462	CHEVERUD	SCREENING_POP	f	SNP				C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50344758					SNP	G	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118093207 () rs orientation: forward

Symbol	Name	Function Class
Gm29232	predicted gene 29232	within coordinates
Gm75384	predicted gene, 75384	878 bp upstream
Rr397203	regulatory region 397203	542 bp upstream
Rr563206	regulatory region 563206	388 bp proximal
Rr563207	regulatory region 563207	591 bp proximal
Rr563208	regulatory region 563208	916 bp proximal
Rr563209	regulatory region 563209	1102 bp proximal