rs50347385 SNP Detail

Summary

• ID
  rs50347385
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28528325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACACATTG AAGACAAACC TCAATGTGTT ATTTGAATAC
  AAGGCTTCCT CATTTTAGGC AAGGGCCACC ACAGGCCCCT CAGTGGTGGA AACTAGGCCA
  S
  TGCTCCACCA CTGAGCCACA CTCCCAGCTC TTCCCCTTGT GAATTCTGAG CAAACAGGGC
  CGTGCCCTCT ACGCCACTTG GTGAATTCTA GGCAAGTGTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988274	NES16135186	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	C	G	G	C	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50347385					SNP	G	G	G	G	G	C	C	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988274	NES16135186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28528325 () rs orientation: forward

Symbol	Name	Function Class
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	1725 bp distal
Tssr65551	transcription start site region 65551	1376 bp downstream
Tssr65552	transcription start site region 65552	1268 bp downstream
Tssr65553	transcription start site region 65553	1107 bp upstream
Tssr65554	transcription start site region 65554	1187 bp upstream
Tssr65555	transcription start site region 65555	1207 bp upstream
Tssr65556	transcription start site region 65556	1242 bp upstream