rs50347513 SNP Detail

Summary

• ID
  rs50347513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52246018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGGGG CTGTCTTCTG
  TACAGTCTAA ATCTTTTAAT GTAATAAGGC CTTGTTTAGA GAAATCTTCT AGAGAAAGGC
  TTTGCCATTC CTCTGGAGCC TGACCCATAT GGGTAATAAC TTTGCCCAGT TTCCAGTGGG
  CTAGTTGGTC TAGGAGTCCT CAACAGGTCA TGCCCAGATC AAAGTCCACA TCCACCCAGG
  W
  CTTCCCTCAG GCAGGGTTTC CTCCACTCCA AGCAGATCTG TGCCATGTGG AATTTAAGAA
  GCCATGAGTT GCATCCACAA CAGTAGTCCC CCTAGAGTAA TACTGACGGT CAATATTGGA
  GAACAAGCAT CATTTTCATA GTTGCTACTC ACATATGCTG CTGCATTTGT CAACATCATG
  TCTTCCCTCT CCTGAAGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60409822	NES15915256	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50347513					SNP	A	A	A	A	A	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60409822	NES15915256	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52246018 () rs orientation: forward

Symbol	Name	Function Class
Foxo1	forkhead box O1	Intron
Rr576502	regulatory region 576502	1967 bp proximal