rs50347788 SNP Detail

Summary

• ID
  rs50347788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28948390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCGCCC TGGCGGCAGC
  TGAAAAGCAC CAGCAAAGTT GTACCCTGGG GTGGTGGGGT TGAATTCCTA GGCTGGTGCT
  TGGCAGAGTG CATGGTGGTG AAATGTGTTG CGTTGTTTGG GTAAAGGCAG GTGTCTTAAT
  TTGGGCTGTT AAACATAACA GATTAGTGCT TAAGCAGCAG TTTACCTCAT AGTCGGCAAG
  R
  CTCGGGGCTG GAAGCTAGGC ATAGGCAGGG AGAGAGCCCC AGTACAGAGA TGGTCTGCTT
  CCTGCTTCTA GTCTTGGCTC TCCATGTCTG AATATAAGAC CTCCAATTTG GGATATGGCT
  TCACCATGTG ACTTTCGGGA ACATCAACAT TAGTTCTAAG CTAGGTACTG TAAGCCCACT
  GCTCAGGAGA CTGGGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986962	NES16139356	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50347788					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986962	NES16139356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28948390 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	498 bp upstream
Cpgi18753	CpG island 18753	779 bp distal
Gm73451	predicted gene, 73451	780 bp downstream
Rr644523	regulatory region 644523	1340 bp distal
Rr644524	regulatory region 644524	1400 bp distal
Rr644525	regulatory region 644525	9 bp distal
Rr644526	regulatory region 644526	1858 bp proximal
Tssr65618	transcription start site region 65618	1295 bp downstream
Tssr71635	transcription start site region 71635	1827 bp upstream
Tssr71636	transcription start site region 71636	1220 bp upstream
Tssr71637	transcription start site region 71637	1026 bp upstream
Tssr71638	transcription start site region 71638	993 bp upstream
Tssr71639	transcription start site region 71639	541 bp upstream
Tssr71640	transcription start site region 71640	497 bp upstream
Tssr71641	transcription start site region 71641	432 bp upstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	1368 bp downstream