rs50348012 SNP Detail

Summary

• ID
  rs50348012
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134098136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT TAACCCTCTC TCTCCTACTG
  A
  GGCTGAGAGT TTGTCGGACA GGATG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321347218	CHEV_4_133926740	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50348012					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134098136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	155 bp proximal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	694 bp proximal
Rr601652	regulatory region 601652	1723 bp proximal
Tssr43895	transcription start site region 43895	789 bp downstream
Tssr43896	transcription start site region 43896	1704 bp downstream
Tssr43897	transcription start site region 43897	1750 bp downstream