rs50348894 SNP Detail

Summary

• ID
  rs50348894
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69048816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCGACC AGCCTGGCCA
  GTGGGGACTT GCTTTGCCCT AATGGAAGCC ACTCTGTGAT TTTGATAGCC TTCTGCTCCT
  GTGTGATCCG AATAGGCTCC GTCATCTGTG TGGCCACTTC TGAATTCCTA CATCTTCCTT
  GAAAAGTGGG AGAAGGGCAG GGGGGCACTC TGCTGTCCAG TCTAGGAGTG CAGGATGCTA
  G
  GGAGTCCTGG GCGCTGACTC TTTTGCCCCC AAGATTCTAA ATAGCTCCTG CAGCCTCAAG
  CGACTGGGAC CTTAGGAAGG ATGGATAAGG CAGGGGTCTT TCCCTGCCTT GGGTAAATGG
  GCCCAGCAGA GGGCAGCCAA GTCAGGGGGT TCACATCTGT GCCTTCTCTT TATCCTTGCT
  CTGTGCACTC CTCAGTCCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132350040	ENSMUSSNP826826	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50348894					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69048816 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	Intron
Cpgi3111	CpG island 3111	655 bp distal
Rr449891	regulatory region 449891	991 bp distal
Rr449892	regulatory region 449892	720 bp distal
Rr449893	regulatory region 449893	119 bp proximal
Tssr102419	transcription start site region 102419	1089 bp downstream
Tssr102420	transcription start site region 102420	1074 bp downstream
Tssr102421	transcription start site region 102421	939 bp downstream
Tssr102422	transcription start site region 102422	929 bp downstream
Tssr102423	transcription start site region 102423	909 bp downstream
Tssr102424	transcription start site region 102424	880 bp downstream