rs50351177 SNP Detail

Summary

• ID
  rs50351177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78521215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAAAA GAAAAACAGT
  TTCCCAGGAG TTTGGAAGAA GAGCTGAATA AATATAAGGG AAATTAAAAA AAAAATAGAA
  GTGAGAGGGA TTTTTTTTTT TTTTTTTTGA GACAGGGTTT CTTTTTTTTT TTTTTTTTTT
  TTTCTGAGTC TATTCGTCCT TGTAATAGGG ACATCCTGTG AGGCTGAGTC TGTTACCAAA
  R
  GTGTATCGTG ATGAGGAAGA CATAAACCTG GAGGTTATAG CAACCTAAAG ACTGCACGGT
  TGAAATGATC CTATTGGTTC TAATCTTCTC TATTAATCTT GGAACACAAT GCTATCATAT
  TTTGTTATCA TATCATATTT ATCCCCGACT GCATTTCTTG TCCTTTACTA TGAAATCCTG
  TCTTGGGAAG TAACCCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss61426865	NES16809504	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs50351177					SNP	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426865	NES16809504	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78521215 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	1613 bp upstream
Cpgi22073	CpG island 22073	1562 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	278 bp proximal
Rr683598	regulatory region 683598	1350 bp proximal
Rr683599	regulatory region 683599	1711 bp proximal
Tssr86295	transcription start site region 86295	1519 bp upstream
Tssr86296	transcription start site region 86296	1549 bp upstream
Tssr86297	transcription start site region 86297	1568 bp upstream
Tssr86298	transcription start site region 86298	1805 bp upstream
Tssr86299	transcription start site region 86299	1824 bp upstream
Tssr86300	transcription start site region 86300	1871 bp upstream
Tssr86301	transcription start site region 86301	1888 bp upstream
Tssr86302	transcription start site region 86302	1904 bp upstream
Tssr90659	transcription start site region 90659	1712 bp downstream