rs50352204 SNP Detail

Summary

• ID
  rs50352204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTACATG CCTTCTTCAA
  GTCTCTTAAT TTTGGTATGT ACATAACTTC GGGATAATTT TCAAAACACA GAAAAAATTA
  CATTGCCATA CTACTATCAA CGAAACAATC TTACCCAAAT CCCACCACAT GATATTTACA
  AGGAGAAGCA ATTGCTCAAG ATGTACAAAA TTAGTAGACT CCAGACTCCA GTAGAATTTT
  Y
  TTCATAATGA GTTGACCATT TCTTCATTTG ATTCCTAGAT TAACCATCTG TGAGCCAGAA
  AAGTTTAACA ACAATTATTC TGCATGGAAA ATGTAAACCT CAAAAGCTAA TTAAAACATT
  TCAAAGTCAA TTAAAAACAT CTCAGGCCTA GCAATCCAGC CAATTCTATA GCTACAGCTC
  CTAAGCAGTC CAATATTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62937154	NES17409710	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50352204					SNP	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937154	NES17409710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114769 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	within coordinates
Rr393006	regulatory region 393006	236 bp upstream
Rr531544	regulatory region 531544	744 bp proximal
Rr531545	regulatory region 531545	1775 bp proximal