rs50353415 SNP Detail

Summary

• ID
  rs50353415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52519875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTTGAGGACA GCTACTGCCA ACAGCAGATA AAAAGTTCAG
  GGCTGAACTG GCTTCTAGGG GACGCCACCT GAAGGAGGTT CACTGAGCTC CAGGAGGCAC
  R
  CAGAGAACAG GTTACCGAAC AAACTTCCCA CCTGCCAGGC CTGGCGACTG GAGGTGTCAG
  GGGCCATTCT GTCTCTAGCT GTACCACTGA TGCTCGGTTA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148439978	ENSMUSSNP5087075	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50353415					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52519875 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1330 bp distal
Rr611420	regulatory region 611420	853 bp proximal
Rr611421	regulatory region 611421	1269 bp proximal
Sod3	superoxide dismutase 3, extracellular	1271 bp upstream
Tssr46168	transcription start site region 46168	1379 bp upstream
Tssr46169	transcription start site region 46169	1392 bp upstream
Tssr46170	transcription start site region 46170	1423 bp upstream