rs50354662 SNP Detail

Summary

• ID
  rs50354662
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19190842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC AAGACTCCTT CCTTTCTTTG
  T
  CAGTCTACTT TTTGCAGCCC TGCTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148777444	ENSMUSSNP6698782	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322523297	CHEV_8_19140826	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50354662					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19190842 () rs orientation: forward

Symbol	Name	Function Class
Gm45826	predicted gene 45826	within coordinates
Spag11b	sperm associated antigen 11B	within coordinates
Tssr76531	transcription start site region 76531	59 bp downstream
Tssr76532	transcription start site region 76532	545 bp upstream
Tssr76533	transcription start site region 76533	603 bp upstream
Tssr76534	transcription start site region 76534	621 bp upstream
Tssr76535	transcription start site region 76535	656 bp upstream
Tssr76536	transcription start site region 76536	1778 bp upstream
Tssr80550	transcription start site region 80550	645 bp downstream
Tssr80551	transcription start site region 80551	1832 bp downstream