rs50355149 SNP Detail

Summary

• ID
  rs50355149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172195626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAT GGTGGCAGTG AAGGAAGGAG
  M
  CTGGATGCCC GCAGGGTGGA AGGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009820	PARCsnp_1.18988	PARC_SEQ	INBRED	f	SNP		C	A
ss120013098	PARCsnp_1.08816	PARC_SEQ	INBRED	f	SNP		C	A
ss146189462	ENSMUSSNP3006919	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320124568	CHEV_1_174298190	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50355149					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172195626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	870 bp proximal
Cpgi1046	CpG island 1046	1725 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	909 bp proximal