rs50355600 SNP Detail

Summary

• ID
  rs50355600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84354733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCAACA TAGCTAATAG
  CTAATATAGA TCTTGAGGAG AGGAACAATT CTCCAATGGG GATCTACTCC AGGCTTCCCA
  GGTGTAGGAG CTAAGATGTT GTTTCTTTTG CCTTGGAACT AAGGAGATCT TTATTCAGTT
  CTATTTGAGT AGCACTCTAC GTGACTACCA AGGTTATATC CACTTAAAGG ACTGCCGGCA
  W
  AGCAAGCAGA AGTAGGAAAC AACTTTGGGA AGGAGATGCC CAGTGAGACG CAATACCTCC
  CCTACATGCA CGCAAGCACT TCTATACGCA AACCCCGCTC TTCACGCTCA TCAAATGGAT
  GTAGGAAAGC AAGAAAGCCC AGGTTCATCA TGATGGTGGA GAAGACCTAT CTTAAGACAT
  AAATCCTCTA AAGATTTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60500619	NES16526865	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	T	T	A		T	T	T	T		T
ss325260809	CHEV_16_84558090	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50355600					SNP	T	T	T	A	T	A	T	T	A	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500619	NES16526865	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84354733 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	437 bp upstream
Rr404934	regulatory region 404934	1812 bp upstream
Rr518505	regulatory region 518505	408 bp proximal
Rr518506	regulatory region 518506	509 bp proximal
Rr518507	regulatory region 518507	1800 bp proximal
Rr518508	regulatory region 518508	1931 bp proximal
Tssr139145	transcription start site region 139145	677 bp downstream