rs50356511 SNP Detail

Summary

• ID
  rs50356511
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127311528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAATGCC TTAGTACACA
  CACAGATGTG TGCGTGCGAG GGTCTCTAAC GGTAAGGTGA GGAACAGTCT CACTTCTGAT
  CAGTGTGACA GAGAAATTAG AAGGCATTTA AGATAACTAG ACCAGGGGGT GCGTGCCTTA
  GGTGGACCCT AATCTAAACA AGGCTTCCCT GGCCTCTCTT TGTCTTCCCC AAAAAGGAAG
  K
  CCTGCCTGCA TTCTTCTCCT GCCAGCCTTG CACCTTTCCT CTCAGGTTTC CCAGCTTTTC
  CCTCCAAAGC AGCCAATAAA CAGGCTCTAC CTCAGGTCTG AGCCTGAGTC TCCTCCCAAC
  AGGACACAGA ACTGCCTTAA AGGCCCAAGT TCCCATTCAC TGTGCCAACA CCTGCCTCCC
  AATTCTGGCC CCTTCCCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145882055	ENSMUSSNP6941773	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50356511					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127311528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19761	CpG island 19761	707 bp proximal
Ctf1	cardiotrophin 1	380 bp upstream
Rr655878	regulatory region 655878	605 bp distal
Rr655879	regulatory region 655879	within coordinates
Rr655880	regulatory region 655880	599 bp proximal
Tssr69270	transcription start site region 69270	353 bp upstream