rs50357231 SNP Detail

Summary

• ID
  rs50357231
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32520789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACATTTTTC AAGGCCCACT ACCTAAAGCC GTGTGGGAGG
  AACTAGGATG AAAATGAGAA AATCTTTTCT TAAAGCTGTT GACAAACCTG GTCAACTCAA
  T
  CAAGCAAGGA AAAAAATACA GAGGAGTGTC AAGGAGGTGA TGTGTCAGGG AAGTGATGGG
  TAGTAGGGCA GAGCTCAAAG GCATCTAAGT TTTCAAACC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148847921	ENSMUSSNP6779312	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50357231					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32520789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5422	CpG island 5422	1142 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr476844	regulatory region 476844	1921 bp proximal
Rr476845	regulatory region 476845	1924 bp proximal
Tssr121995	transcription start site region 121995	1694 bp downstream
Tssr121996	transcription start site region 121996	1748 bp downstream
Tssr121997	transcription start site region 121997	1759 bp downstream