rs50357559 SNP Detail

Summary

• ID
  rs50357559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18478319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACATGATC AAAGTCCATA
  TAATTAAACA GTTAATATTA GTGAAAAGGA ACATACCAAA GTCTGTCCAA CTGAGGCTTT
  AGGACTTAAA AAAAAATAGC CTCTAGGGAA TGACACTGTG AAAACAGCAT GCCTGGTTTG
  GGGATGAGGA GGCAATGTGA TTCTTATTAA ACAACTAAAT CATGGTAACC ACAGACTTAT
  Y
  CTAAGCCCAA GGTAAAAGGA AATGGAGTCT TAGTAAGGAA CAGTTTACGA TGTAATTTAG
  GTCTGTAAAT ATAACAGCAA ATATATGAGT ATAAGAGAAT CCAGGAAATA TTCTGTGCAT
  TTGTTACAAA TATTATAAGG AGGTACCTTC TAGCTTACCT AAATGTAAGT TAATATAAAT
  GATTAAAATG AGAAAATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60375947	NES15879756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50357559					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60375947	NES15879756	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18478319 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65503	predicted gene, 65503	264 bp downstream
Rr573897	regulatory region 573897	1739 bp distal